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Taxonomy
Popular Name: Genus: Species: Class: Order: Family:
Animals
Sequence
NCBI-Acc: NC_001941 Sequence Description: Ovis aries mitochondrion, complete genome.
BaseCount: 5594 a 4289 c 2181 g 4552 t
DNA-Sequence: NC_001941.txt AminoAcid-Sequence: NC_001941.txt
PCR
Name: 12S-border Type: Sequencing System: Sequencing Sequence: NC_001941
Genetic Element: 12S rRNA (?) Ampl.Length: 340 GenomSize: AnnTemp: 51
Primers
PPName Type PrimerSequence Length T_ann TmThermo Tm2AT %GC Position
12S-border-f Sense gCTAA TACAg TCTAT ATACC gCC 23 59.5 50.7 66 43.5 664-686
12S-border-r Antisense TATgC TTACC TTgTT ACgAC TT 22 59.5 50.8 60 36.4 1003-982
12S-border-Amplicon Amplicon gctaa tacag tctat atacc gccat cttca gcaaa cccta aaaaa gggac aaaag taagc tcaat aataa cacat aaaga cgtta ggtca aggtg taacc tatgg agtgg gaaga aatgg gctac atttt ctacc caaga aaatt taata cgaaa gccat tatga aatta atagc caaag gagga tttag cagta aacta agaat agagt gctta gttga atcag gccat gaagc acgca cacac cgccc gtcac cctcc tcaag taaat atgat atact taaac ctatt tacat atatc aacca cacga gagga gacaa gtcgt aacaa ggtaa gcata 340 51 89.8 942 38.5 664-1003
Organisation Data
Acronym: BfR BfR Phone: +49-30-8412-0
Partner Number: 1 Fax: +41 308412 3685
Type: Authority e-Mail: j.zagon@bfr.bund.de
Name: BfR-Federal Institute for Risk Assessment, Berlin Website: http://www.bfr.bund.de/
Umbrella Organisation: Bund, Germany (Bundesinstitut für Risikobewertung)
Postal Address: Thielallee 88-92, D-14195 Berlin Country: Germany
Remarks: Coordinator MolSpec-ID-project, Task Leader Workpackages 1.4 and 4
Persons
Title / Name e-Mail Phone Remarks
Mr. Hermann Broll h.broll@bfr.bund.de +49-30-8412 3639
Mr. Andreas Butschke a.butschke@bfr.bund.de +49-30-8412 3687
Dr. Jutta Zagon j.zagon@bfr.bund.de +49-30-8412 3876 MolSpec-Coordinator
Samples
FoodName Extraction Process cNucl cDNA aDNA Supplier
Muscle meat from 7 different animal species NucleoSpinTissue NoData 5 - 69 3 BFEL
Muscle meat from 7 different animal species InviSorb NoData 22 - 61 3 BFEL
Muscle meat from 7 different animal species Dneasy NoData 15 - 79 3 BFEL
Muscle meat from 7 different animal species NucleoSpinFood NoData 26 - 132 3 BFEL
Muscle meat from 7 different animal species E.Z.N.A NoData 4 - 26 3 BFEL
Muscle meat from 7 different animal species Lyse NoData 6 - 7 3 BFEL
Muscle meat from 7 different animal species CTAB NoData 83 - 306 3 BFEL
Muscle meat from 7 different animal species Triton-X100 NoData 8 - 23 2 BFEL
Salami (S2 from Partner 2, no heat treatment) CTAB no heat treatment 52±8 80±16 103 VUP
Salami (S2 from Partner 2, no heat treatment) GeneSpin no heat treatment 22±1 42±10 103 VUP
Salami (S2 from Partner 2, no heat treatment) InviSorb no heat treatment 106±17 222±69 104 VUP
Pâté (S3 from Partner 2, heat-treated at 117 °C) CTAB heat-treated at 117 °C 28±7 97±15 102 VUP
Pâté (S3 from Partner 2, heat-treated at 117 °C) GeneSpin heat-treated at 117 °C 6±2 8±7 100 VUP
Pâté (S3 from Partner 2, heat-treated at 117 °C) InviSorb heat-treated at 117 °C 40±13 270±34 102 VUP
Devices
Electrophor. RT-device DNA-Seqencer ThermoCyl. SouthernBlot Other
DNA+protein ABI 7700+LC ABI 310 PE 2400 yes ELISA plate reader
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